STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC62610.1Deoxyhypusine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
efp
Elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
   
 0.999
KIC63479.1
Decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.706
KIC63481.1
Agmatinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family.
 
   
 0.651
KIC63439.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.596
KIC63750.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.596
KIC62609.1
Peptide chain release factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.580
KIC62611.1
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.568
KIC65095.1
Adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S- adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine.
  
 
 0.525
KIC62608.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
   0.416
Your Current Organism:
Chryseobacterium taiwanense
NCBI taxonomy Id: 363331
Other names: BCRC 17412, C. taiwanense, Chryseobacterium taiwanense Tai et al. 2006 emend. Montero-Calasanz et al. 2014, Chryseobacterium taiwanense Tai et al. 2006 emend. Wu et al. 2013, IAM 15317, JCM 21767, LMG 23355, LMG:23355, strain Soil-3-27
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