STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107886969Uncharacterized protein LOC107886969. (215 aa)    
Predicted Functional Partners:
LOC107947400
Ribosomal RNA small subunit methyltransferase E isoform X1.
      
 0.583
LOC107896634
Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic.
  
     0.483
LOC107927085
Sorting nexin 2B-like.
  
     0.483
LOC107950517
Thylakoid lumenal 19 kDa protein, chloroplastic-like.
  
     0.476
LOC107915681
Thylakoid lumenal 19 kDa protein, chloroplastic-like.
  
     0.474
LOC107900977
Uncharacterized protein LOC107900977.
  
     0.468
LOC107928972
Uncharacterized protein LOC107928972.
  
     0.467
LOC107888510
Transcription elongation factor B polypeptide 3-like.
      
 0.459
LOC107931305
Transcription elongation factor B polypeptide 3-like.
      
 0.459
LOC107953301
BTB/POZ domain-containing protein At3g44820-like; Belongs to the NPH3 family.
      
 0.455
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.