STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107887157Tetratricopeptide repeat protein 28-like. (730 aa)    
Predicted Functional Partners:
LOC107927745
Protein CDC73 homolog.
    
 0.843
LOC107909410
Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.
   
 0.841
LOC107917781
Anaphase-promoting complex subunit 6.
    
 0.841
LOC107925255
Anaphase-promoting complex subunit 4.
    
 0.840
LOC107950328
Anaphase-promoting complex subunit 11.
    
 0.829
LOC107912677
Anaphase-promoting complex subunit 5-like.
    
 0.758
LOC107924510
Anaphase-promoting complex subunit 5-like.
    
 0.758
LOC107893681
Anaphase-promoting complex subunit 2-like isoform X1; Belongs to the cullin family.
    
 0.746
LOC107920483
Anaphase-promoting complex subunit 2-like; Belongs to the cullin family.
    
 0.746
LOC107891711
Protein PAF1 homolog.
    
 0.726
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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