STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107887232Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (769 aa)    
Predicted Functional Partners:
LOC107911797
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
   
 0.959
LOC107924493
Protein transport protein SEC13 homolog B-like isoform X1; Belongs to the WD repeat SEC13 family.
   
 0.959
LOC107939882
Protein transport protein SEC13 homolog B; Belongs to the WD repeat SEC13 family.
   
 0.959
LOC107900783
Protein transport protein SEC31 homolog B-like isoform X1.
   
 0.956
LOC107916161
Protein transport protein SEC31 homolog B-like.
   
 0.956
LOC107929664
Protein transport protein SEC31 homolog B-like.
   
 0.956
LOC107945594
Protein transport protein SEC31 homolog B-like.
   
 0.956
LOC107950735
Protein transport protein SEC31 homolog B-like.
   
 0.956
LOC107886331
Protein transport protein Sec24-like At3g07100.
   
 0.921
LOC107903437
Protein transport protein Sec24-like At3g07100 isoform X1.
   
 0.921
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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