STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107887439Uncharacterized protein LOC107887439. (840 aa)    
Predicted Functional Partners:
LOC107896567
Uncharacterized protein LOC107896567 isoform X1.
  
     0.516
LOC107902852
Uncharacterized protein LOC107902852.
  
     0.504
LOC107920571
Uncharacterized protein LOC107920571 isoform X1.
  
     0.503
LOC107906122
Uncharacterized protein At1g51745-like.
  
     0.499
LOC107941020
Uncharacterized protein At1g51745-like.
  
     0.497
LOC107887105
Uncharacterized protein LOC107887105.
  
     0.494
LOC107912117
Uncharacterized protein LOC107912117 isoform X1.
  
     0.494
LOC107899685
Uncharacterized protein LOC107899685.
  
     0.492
LOC107901007
Protein BIG GRAIN 1-like B.
  
     0.491
LOC107887143
Uncharacterized protein At5g05190-like.
  
     0.490
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (20%) [HD]