STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107889184Capsanthin/capsorubin synthase, chromoplastic-like isoform X1. (497 aa)    
Predicted Functional Partners:
LOC107897837
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
   
 
 0.982
LOC107913245
Zeaxanthin epoxidase, chloroplastic; Converts zeaxanthin into antheraxanthin and subsequently violaxanthin.
   
 
 0.982
LOC107892463
Violaxanthin de-epoxidase, chloroplastic-like.
     
 0.979
LOC107961898
Violaxanthin de-epoxidase, chloroplastic-like isoform X1.
     
 0.979
LOC107892904
Capsanthin/capsorubin synthase, chromoplastic-like.
  
  
 
0.900
LOC107959240
Indole-3-acetaldehyde oxidase-like.
      
 0.820
LOC107947364
Probable carotenoid cleavage dioxygenase 4, chloroplastic.
      
 0.804
LOC107946820
Probable carotenoid cleavage dioxygenase 4, chloroplastic.
      
 0.804
LOC107902032
15-cis-phytoene desaturase, chloroplastic/chromoplastic-like.
      
 0.802
LOC107914777
15-cis-phytoene desaturase, chloroplastic/chromoplastic-like isoform X1.
      
 0.802
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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