LOC107889736 protein (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107889736

LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like. (698 aa)

Predicted Functional Partners:

LOC107889755

0.464

LOC107890985

0.460

LOC107898845

0.459

LOC107941693

0.455

LOC107899029

0.451

LOC107919476

0.450

LOC107929526

0.449

LOC107948859

0.449

LOC107909454

0.443

LOC107936546

0.439

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107889736	LOC107889755	A0A1U8I0N7	A0A1U8I0Q7	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.464
LOC107889736	LOC107890985	A0A1U8I0N7	A0A1U8HYM2	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.460
LOC107889736	LOC107898845	A0A1U8I0N7	A0A1U8IP44	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.459
LOC107889736	LOC107899029	A0A1U8I0N7	A0A1U8IW22	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.451
LOC107889736	LOC107909454	A0A1U8I0N7	A0A1U8JQA3	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Transcription factor bHLH121-like isoform X1.	0.443
LOC107889736	LOC107919476	A0A1U8I0N7	A0A1U8KPM1	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.450
LOC107889736	LOC107929526	A0A1U8I0N7	A0A1U8LPG8	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.449
LOC107889736	LOC107936546	A0A1U8I0N7	A0A1U8MGV5	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Transcription factor bHLH121-like.	0.439
LOC107889736	LOC107941693	A0A1U8I0N7	A0A1U8MVA3	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.455
LOC107889736	LOC107948859	A0A1U8I0N7	A0A1U8NJI2	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	Uncharacterized protein At1g04910-like.	0.449
LOC107889755	LOC107889736	A0A1U8I0Q7	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.464
LOC107890985	LOC107889736	A0A1U8HYM2	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.460
LOC107898845	LOC107889736	A0A1U8IP44	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.459
LOC107899029	LOC107889736	A0A1U8IW22	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.451
LOC107909454	LOC107889736	A0A1U8JQA3	A0A1U8I0N7	Transcription factor bHLH121-like isoform X1.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.443
LOC107919476	LOC107889736	A0A1U8KPM1	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.450
LOC107929526	LOC107889736	A0A1U8LPG8	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.449
LOC107936546	LOC107889736	A0A1U8MGV5	A0A1U8I0N7	Transcription factor bHLH121-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.439
LOC107941693	LOC107889736	A0A1U8MVA3	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.455
LOC107948859	LOC107889736	A0A1U8NJI2	A0A1U8I0N7	Uncharacterized protein At1g04910-like.	LOW QUALITY PROTEIN: rop guanine nucleotide exchange factor 7-like.	0.449

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Neighborhood

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About