STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107892587Ankyrin repeat-containing protein At3g12360-like. (488 aa)    
Predicted Functional Partners:
LOC107937836
Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.621
LOC107939602
Kinesin-like calmodulin-binding protein isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.621
LOC107943835
Classical arabinogalactan protein 5.
   
 0.568
LOC107906665
Serine/threonine-protein phosphatase.
    
  0.510
LOC107912395
Serine/threonine-protein phosphatase.
    
  0.510
LOC107923080
Serine/threonine-protein phosphatase.
    
  0.510
LOC107949910
Serine/threonine-protein phosphatase.
    
  0.510
LOC107953193
Serine/threonine-protein phosphatase.
    
  0.510
LOC107911532
Protein ACCELERATED CELL DEATH 6-like.
  
     0.499
LOC107911530
Ankyrin-1-like isoform X1.
  
     0.486
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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