STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107891609Gibberellin 2-beta-dioxygenase 8-like isoform X1; Belongs to the iron/ascorbate-dependent oxidoreductase family. (365 aa)    
Predicted Functional Partners:
LOC107951768
Protein DMR6-LIKE OXYGENASE 2-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.507
LOC107932117
1-aminocyclopropane-1-carboxylate oxidase 1-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.502
LOC107932127
1-aminocyclopropane-1-carboxylate oxidase 5-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.500
LOC107952509
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.497
LOC107952624
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.494
LOC107902912
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.493
LOC107942509
Leucoanthocyanidin dioxygenase-like; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.492
LOC107949329
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.491
LOC107903534
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.488
LOC107914958
Probable 2-oxoglutarate-dependent dioxygenase AOP1; Belongs to the iron/ascorbate-dependent oxidoreductase family.
  
     0.488
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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