STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107895046Uncharacterized protein LOC107895046. (505 aa)    
Predicted Functional Partners:
LOC107936094
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.787
LOC107946230
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
  0.761
LOC107902952
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.709
LOC107932634
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.709
LOC107948496
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
    
  0.709
LOC107910621
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
 0.604
LOC107914801
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X1.
    
 0.604
LOC107927134
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
 0.604
LOC107942796
Biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
 0.604
LOC107951384
methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial-like isoform X1.
    
 0.604
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.