STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107893384F-box only protein 13-like. (399 aa)    
Predicted Functional Partners:
LOC107905235
SKP1-interacting partner 15.
      
0.491
LOC107908255
Uncharacterized protein LOC107908255 isoform X1.
  
     0.478
LOC107925400
Uncharacterized protein LOC107925400.
  
     0.471
bHLH123D
Basic helix-loop-helix protein 123D.
  
     0.466
LOC107896698
Uncharacterized protein LOC107896698.
  
     0.466
LOC107916186
Uncharacterized protein LOC107916186.
  
     0.466
LOC107922841
Transcription factor MYC1-like isoform X1.
  
     0.465
LOC107925104
Uncharacterized protein LOC107925104 isoform X1.
  
     0.461
LOC107896118
Uncharacterized protein LOC107896118.
  
     0.460
LOC107912286
Protein phosphatase 2C 32-like isoform X1.
  
     0.459
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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