STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107893898Serine/threonine-protein kinase ATG1c-like isoform X1. (729 aa)    
Predicted Functional Partners:
LOC107907457
Autophagy-related protein 11-like.
    
 0.988
LOC107958678
Autophagy-related protein 11-like.
    
 0.988
LOC107933140
Autophagy-related protein 101-like isoform X1.
    
 0.983
LOC107945310
Autophagy-related protein 101-like isoform X1.
    
 0.983
LOC107929538
Autophagy-related protein 13a-like.
   
 0.979
LOC107937269
Autophagy-related protein 13a-like isoform X2.
   
 0.979
LOC107931241
Autophagy-related protein 13b-like.
   
 0.975
LOC107959577
Autophagy-related protein 13b-like isoform X1.
   
 0.975
LOC107959443
Autophagy-related protein 13b-like isoform X1.
   
 0.975
LOC107900947
Beclin-1-like protein.
    
 0.957
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.