Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC107895457Probable serine/threonine-protein kinase DDB_G0288147. (719 aa)    
Predicted Functional Partners:
LOC107943835
Classical arabinogalactan protein 5.
    
 0.708
LOC107930476
Protein TIME FOR COFFEE-like.
    
  0.495
LOC107910001
Uncharacterized protein LOC107910001.
  
     0.461
LOC107954372
Uncharacterized protein LOC107954372.
  
     0.460
LOC107946004
Uncharacterized protein LOC107946004 isoform X1.
  
     0.449
LOC107901268
annotation not available
    
 0.447
LOC107930842
annotation not available
    
 0.447
LOC107932993
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like.
    
 0.447
LOC107962744
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like.
    
 0.447
LOC107962743
Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein-like.
    
 0.447
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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