STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107898029Proline-rich receptor-like protein kinase PERK13. (758 aa)    
Predicted Functional Partners:
LOC107943835
Classical arabinogalactan protein 5.
    
 0.528
LOC107889586
Phosphoenolpyruvate carboxylase kinase 1-like; Belongs to the protein kinase superfamily.
  
 
  0.452
LOC107926832
Phosphoenolpyruvate carboxylase kinase 1-like; Belongs to the protein kinase superfamily.
  
 
  0.450
LOC107934498
CDPK-related kinase 5-like isoform X1.
  
 
  0.437
LOC107945410
CDPK-related kinase 5-like isoform X1.
  
 
  0.437
LOC107954431
CDPK-related kinase 3-like isoform X1.
  
 
  0.432
LOC107891389
CDPK-related kinase 7-like isoform X1.
  
 
  0.431
LOC107948907
CDPK-related kinase 4-like isoform X1.
  
 
  0.431
LOC107897804
CDPK-related kinase 5 isoform X1.
  
 
  0.430
LOC107913204
CDPK-related kinase 5-like.
  
 
  0.429
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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