STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107899057Mitochondrial succinate-fumarate transporter 1-like; Belongs to the mitochondrial carrier (TC 2.A.29) family. (315 aa)    
Predicted Functional Partners:
LOC107886246
UPF0235 protein At5g63440-like isoform X1.
    
   0.948
LOC107950188
UPF0235 protein At5g63440 isoform X1.
    
   0.948
LOC107901634
Cysteine proteinase COT44-like isoform X1; Belongs to the peptidase C1 family.
    
   0.880
LOC107900642
Low-temperature-induced cysteine proteinase-like; Belongs to the peptidase C1 family.
    
   0.880
LOC107902646
Low-temperature-induced cysteine proteinase-like; Belongs to the peptidase C1 family.
    
   0.880
LOC107905474
Low-temperature-induced cysteine proteinase; Belongs to the peptidase C1 family.
    
   0.880
LOC107905599
Cysteine proteinase RD21a-like; Belongs to the peptidase C1 family.
    
   0.880
LOC107908889
Low-temperature-induced cysteine proteinase-like; Belongs to the peptidase C1 family.
    
   0.880
LOC107913331
Cysteine proteinase COT44-like isoform X1; Belongs to the peptidase C1 family.
    
   0.880
LOC107918076
Cysteine proteinase RD21a-like; Belongs to the peptidase C1 family.
    
   0.880
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.