STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107899082Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family. (324 aa)    
Predicted Functional Partners:
LOC107904205
RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like.
   
 0.946
LOC107894243
Cleavage and polyadenylation specificity factor subunit 3-I.
   
 0.834
LOC107954829
Serine/threonine-protein phosphatase 4 regulatory subunit 2-like.
    
 0.809
LOC107955772
Uncharacterized protein LOC107955772.
    
 0.809
LOC107888746
Cleavage and polyadenylation specificity factor subunit 1-like.
    
 0.762
LOC107892045
Cleavage and polyadenylation specificity factor subunit 1-like.
    
 0.762
LOC107928461
30-kDa cleavage and polyadenylation specificity factor 30-like.
    
 0.761
LOC107945204
30-kDa cleavage and polyadenylation specificity factor 30-like.
    
 0.761
LOC107938083
PP2A regulatory subunit TAP46-like isoform X1.
    
 
 0.713
LOC107930476
Protein TIME FOR COFFEE-like.
    
 0.660
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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