STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107899470Serine/threonine-protein kinase ATG1t-like. (289 aa)    
Predicted Functional Partners:
LOC107899677
DNA polymerase delta small subunit-like.
   
 0.987
LOC107948426
DNA polymerase delta small subunit-like.
   
 0.987
LOC107935704
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.982
LOC107950214
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
  
 0.982
LOC107886366
Probable DNA primase large subunit.
   
 0.976
LOC107891949
Chromosome transmission fidelity protein 18 homolog.
   
 0.976
LOC107910013
Probable DNA primase large subunit.
   
 0.976
LOC107916973
Chromosome transmission fidelity protein 18 homolog.
   
 0.976
LOC107947091
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 0.976
LOC107947115
DNA primase; Belongs to the eukaryotic-type primase small subunit family.
   
 0.976
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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