STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107900823Putative endoplasmic reticulum metallopeptidase 1-A isoform X1. (127 aa)    
Predicted Functional Partners:
LOC107938106
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.646
LOC107940705
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
     
 0.646
PRP10
Classical arabinogalactan protein 9.
   
 
 0.591
LOC107887758
Photosystem II stability/assembly factor HCF136, chloroplastic-like.
     
 0.570
LOC107886826
Photosystem II stability/assembly factor HCF136, chloroplastic-like.
     
 0.570
ndhJ
NAD(P)H-quinone oxidoreductase subunit J, chloroplastic; NDH shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient.
    
  0.482
LOC107905682
E3 ubiquitin-protein ligase UPL5-like isoform X1.
    
 0.481
LOC107907409
E3 ubiquitin-protein ligase UPL5-like isoform X1.
    
 0.481
LOC107907952
E3 ubiquitin-protein ligase UPL5-like.
    
 0.481
LOC107961932
E3 ubiquitin-protein ligase UPL5-like.
    
 0.481
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.