STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107901720CBS domain-containing protein CBSX5-like. (407 aa)    
Predicted Functional Partners:
LOC107906460
SNF1-related protein kinase regulatory subunit gamma-like PV42a.
     
 0.641
LOC107943957
SNF1-related protein kinase regulatory subunit gamma-like PV42a.
     
 0.641
LOC107930476
Protein TIME FOR COFFEE-like.
    
 0.635
LOC107929300
GMP synthase [glutamine-hydrolyzing]-like.
  
 0.623
LOC107936680
GMP synthase [glutamine-hydrolyzing]-like.
  
 0.623
LOC107962982
GMP synthase [glutamine-hydrolyzing]-like isoform X1.
  
 0.623
LOC107963780
GMP synthase [glutamine-hydrolyzing]-like.
  
 0.623
LOC107909412
Protein RER1; Involved in the retrieval of endoplasmic reticulum membrane proteins from the early Golgi compartment.
      
 0.611
ACT2
Actin-7-like.
   
  
 0.595
LOC107932458
Actin.
   
  
 0.594
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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