STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107902046Protein CHUP1, chloroplastic-like isoform X1. (767 aa)    
Predicted Functional Partners:
LOC107916030
Probable LRR receptor-like serine/threonine-protein kinase At4g08850.
  
 
  0.524
LOC107937427
Zinc finger protein ZAT9-like.
  
 
  0.523
LOC107926188
Zinc finger protein ZAT9-like.
  
 
  0.521
LOC107911399
Zinc finger protein ZAT9-like.
  
 
  0.516
LOC107911257
LOW QUALITY PROTEIN: zinc finger protein ZAT9-like.
  
 
  0.516
LOC107943835
Classical arabinogalactan protein 5.
    
 0.513
LOC107954561
Zinc finger protein ZAT9-like.
  
 
  0.502
LOC107890430
Probable LRR receptor-like serine/threonine-protein kinase At4g08850.
  
 
  0.497
LOC107924116
Zinc finger protein ZAT1-like.
  
 
  0.493
LOC107947480
Zinc finger protein ZAT9-like.
  
 
  0.492
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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