STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107900689Transcription factor bHLH145-like. (356 aa)    
Predicted Functional Partners:
LOC107899893
Protein BPS1, chloroplastic-like.
  
     0.524
LOC107929649
UPF0496 protein 4-like.
  
     0.522
LOC107938917
Muscle M-line assembly protein unc-89-like.
  
     0.517
LOC107940092
Uncharacterized protein LOC107940092.
  
     0.517
LOC107886056
Zinc finger CCCH domain-containing protein 18-like.
  
     0.513
LOC107944499
Rho GTPase-activating protein gacO-like.
  
     0.511
LOC107944858
Probable membrane-associated kinase regulator 6.
  
     0.505
LOC107945030
Uncharacterized protein LOC107945030.
  
     0.493
LOC107928803
Uncharacterized protein LOC107928803.
  
     0.489
LOC107952278
Protein PHYTOCHROME KINASE SUBSTRATE 1-like.
  
     0.475
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.