STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107900963Nucleolin 1-like. (634 aa)    
Predicted Functional Partners:
LOC107912088
Nucleolar protein 56-like.
   
 
 0.663
LOC107924418
Nucleolar protein 56-like.
   
 
 0.663
LOC107941045
Nucleolar protein 56-like.
   
 
 0.663
LOC107904604
Mediator of RNA polymerase II transcription subunit 36a.
   
 
 0.573
LOC107908112
Probable mediator of RNA polymerase II transcription subunit 36b.
   
 
 0.573
LOC107917830
Probable mediator of RNA polymerase II transcription subunit 36b isoform X1.
   
 
 0.573
LOC107951276
Mediator of RNA polymerase II transcription subunit 36a-like.
   
 
 0.573
LOC107926354
pre-rRNA-processing protein ESF2-like.
   
   0.542
LOC107926517
pre-rRNA-processing protein ESF2-like.
   
   0.542
LOC107947060
Uncharacterized protein LOC107947060.
   
 
 0.527
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.