STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107904742Pentatricopeptide repeat-containing protein At2g40720-like. (850 aa)    
Predicted Functional Partners:
LOC107960772
Pentatricopeptide repeat-containing protein At2g28050-like.
  
   
0.492
LOC107902738
Pentatricopeptide repeat-containing protein At2g28050-like.
  
   
0.490
LOC107895288
H/ACA ribonucleoprotein complex non-core subunit NAF1-like.
      
 0.450
LOC107920137
H/ACA ribonucleoprotein complex non-core subunit NAF1-like.
      
 0.450
LOC107955953
Floricaula/leafy-like transcription factor; Probable transcription factor. Belongs to the FLO/LFY family.
      
 0.445
LOC107914027
Pentatricopeptide repeat-containing protein At1g06270-like.
      
 0.441
LOC107957637
Pentatricopeptide repeat-containing protein At1g06270-like.
      
 0.441
LOC107886886
Uncharacterized protein LOC107886886.
  
     0.418
LOC107909026
Uncharacterized protein LOC107909026.
  
     0.418
LOC107915037
Uncharacterized protein LOC107915037.
  
 
 
 0.416
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.