STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107905747UPF0047 protein YjbQ-like. (178 aa)    
Predicted Functional Partners:
LOC107898631
Putative ribosome biogenesis GTPase RsgA isoform X1.
    
  0.741
LOC107933405
Putative ribosome biogenesis GTPase RsgA isoform X1.
    
  0.741
LOC107894239
Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like.
   
 
 0.674
LOC107899221
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.674
LOC107920644
Thiamine biosynthetic bifunctional enzyme TH1, chloroplastic-like isoform X1.
   
 
 0.674
LOC107928752
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.674
LOC107952735
Probable aminopyrimidine aminohydrolase, mitochondrial isoform X1.
   
 
 0.674
LOC107958274
Probable aminopyrimidine aminohydrolase, mitochondrial.
   
 
 0.674
LOC107900746
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
     
 0.504
LOC107957526
NAD(P)H-hydrate epimerase; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
     
 0.504
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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