STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107907767Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like. (162 aa)    
Predicted Functional Partners:
LOC107940907
Zinc-finger homeodomain protein 2-like.
  
 
 
 0.527
LOC107944899
Methyltransferase.
  
     0.519
LOC107955327
Methyltransferase.
  
     0.516
LOC107911237
Methyltransferase.
  
     0.515
LOC107956734
Methyltransferase.
  
     0.515
LOC107957265
Methyltransferase.
  
     0.515
LOC107956470
Methyltransferase.
  
     0.514
LOC107959514
AT-hook motif nuclear-localized protein 14-like.
  
     0.513
LOC107921833
Pyruvate kinase 1, cytosolic-like.
  
     0.511
LOC107897883
Methyltransferase.
  
     0.510
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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