STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107909690Pentatricopeptide repeat-containing protein At1g60770-like. (491 aa)    
Predicted Functional Partners:
LOC107951210
Pentatricopeptide repeat-containing protein PNM1, mitochondrial-like.
  
   0.871
LOC107946554
Pentatricopeptide repeat-containing protein PNM1, mitochondrial-like.
  
   0.867
LOC107945265
Pentatricopeptide repeat-containing protein At3g02650, mitochondrial isoform X1.
   
  
0.838
LOC107951544
50S ribosomal protein L3-2, chloroplastic-like; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.828
LOC107922572
Uncharacterized protein LOC107922572; Belongs to the universal ribosomal protein uS5 family.
   
   0.804
LOC107937026
Uncharacterized protein LOC107937026; Belongs to the bacterial ribosomal protein bS18 family.
   
   0.795
LOC107897148
Stress response protein NST1-like.
    
   0.791
LOC107914807
Stress response protein NST1-like.
    
   0.791
rpl2
Ribosomal protein L2.
   
 
 0.787
LOC107920021
60S ribosomal protein L2, mitochondrial-like.
   
 
 0.787
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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