STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107911447Uncharacterized protein LOC107911447 isoform X1. (167 aa)    
Predicted Functional Partners:
LOC107908570
Uncharacterized protein LOC107908570.
  
     0.533
LOC107921427
Uncharacterized protein LOC107921427.
  
     0.532
LOC107925377
Uncharacterized protein LOC107925377.
  
     0.532
LOC107938842
Uncharacterized protein LOC107938842.
  
     0.531
LOC107918379
Methyltransferase.
  
     0.529
LOC107947113
Methyltransferase.
  
     0.529
LOC107897895
Methyltransferase.
  
     0.528
LOC107926074
Methyltransferase.
  
     0.527
LOC107930156
Auxin response factor; Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
  
     0.527
LOC107950116
Methyltransferase.
  
     0.527
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.