STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107912172Heat shock factor protein HSF8-like. (474 aa)    
Predicted Functional Partners:
LOC107912628
E3 ubiquitin-protein ligase COP1-like.
      
 0.707
LOC107924485
E3 ubiquitin-protein ligase COP1-like.
      
 0.707
LOC107935346
E3 ubiquitin-protein ligase COP1-like.
      
 0.707
LOC107886050
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107892568
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107898837
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107898849
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107899042
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107906601
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
LOC107941712
Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family.
      
 0.660
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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