STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107912190Pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like. (719 aa)    
Predicted Functional Partners:
LOC107945106
Pentatricopeptide repeat-containing protein At1g05600-like.
  
     0.485
LOC107899408
RNA-binding protein CP33, chloroplastic-like.
   
 
 0.458
LOC107914412
RNA-binding protein CP33, chloroplastic-like.
   
 
 0.458
LOC107916627
RNA-binding protein CP33, chloroplastic-like.
   
 
 0.458
LOC107887169
30S ribosomal protein 3, chloroplastic-like.
   
 
 0.447
LOC107916675
30S ribosomal protein 3, chloroplastic-like.
   
 
 0.447
LOC107908636
Pentatricopeptide repeat-containing protein At2g17033-like.
   
  
 0.446
LOC107927809
Pentatricopeptide repeat-containing protein At2g17033-like.
   
  
 0.446
LOC107887353
50S ribosomal protein L18-like.
    
 
 0.440
LOC107893116
50S ribosomal protein L3, chloroplastic-like; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.440
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.