STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107912269NAC domain-containing protein 4-like isoform X1. (378 aa)    
Predicted Functional Partners:
LOC107917853
Transcription factor BPE-like.
  
     0.542
LOC107890316
NAC transcription factor 29-like isoform X1.
  
     0.541
LOC107908849
LOB domain-containing protein 38-like.
  
     0.540
LOC107886954
LOB domain-containing protein 38-like isoform X1.
  
     0.539
LOC107952773
Uncharacterized protein LOC107952773.
  
     0.539
LOC107911237
Methyltransferase.
  
     0.537
LOC107918379
Methyltransferase.
  
     0.537
LOC107937753
Clathrin light chain 1-like.
  
     0.537
LOC107947113
Methyltransferase.
  
     0.537
LOC107950116
Methyltransferase.
  
     0.536
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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