STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107910711Uncharacterized protein LOC107910711. (227 aa)    
Predicted Functional Partners:
LOC107915173
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.997
LOC107939764
DNA-directed RNA polymerase I subunit rpa49-like.
   
 0.996
LOC107950182
DNA-directed RNA polymerase I subunit rpa49-like.
   
 0.996
LOC107938112
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.993
LOC107940714
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.993
LOC107946230
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
   
 0.992
LOC107902952
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.985
LOC107932634
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.985
LOC107948496
DNA-directed RNA polymerases II, IV and V subunit 8B-like; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.985
LOC107909149
DNA-directed RNA polymerases II and V subunit 6B-like.
   
 0.984
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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