STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107911371WD repeat-containing protein 86-like. (423 aa)    
Predicted Functional Partners:
LOC107927745
Protein CDC73 homolog.
    
 0.822
LOC107905746
Tetratricopeptide repeat protein SKI3-like.
    
 0.794
LOC107905709
Tetratricopeptide repeat protein SKI3-like.
    
 0.794
LOC107929933
Protein CTR9 homolog.
    
 0.669
LOC107932237
Protein CTR9 homolog.
    
 0.669
LOC107936888
Exosome complex component CSL4.
    
 0.615
LOC107943835
Classical arabinogalactan protein 5.
    
 0.599
LOC107891711
Protein PAF1 homolog.
   
 0.598
LOC107950655
Protein PAF1 homolog isoform X1.
   
 0.598
LOC107952365
Protein PAF1 homolog.
   
 0.598
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.