LOC107913018 protein (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107913018

General transcription factor 3C polypeptide 5-like. (588 aa)

Predicted Functional Partners:

LOC107931920

0.993

LOC107947032

0.993

LOC107889049

0.938

LOC107891629

0.938

LOC107893131

0.900

LOC107912745

0.900

LOC107916695

0.900

LOC107922495

0.900

LOC107888743

0.866

LOC107892078

0.866

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107888743	LOC107889049	A0A1U8HWV3	A0A1U8HS33	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor TFIIIB component B'' homolog.	0.975
LOC107888743	LOC107891629	A0A1U8HWV3	A0A1U8I146	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor TFIIIB component B'' homolog.	0.975
LOC107888743	LOC107892078	A0A1U8HWV3	A0A1U8I2U3	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.900
LOC107888743	LOC107893131	A0A1U8HWV3	A0A1U8I5Q6	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.906
LOC107888743	LOC107912745	A0A1U8HWV3	A0A1U8K7D2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.906
LOC107888743	LOC107913018	A0A1U8HWV3	A0A1U8K337	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor 3C polypeptide 5-like.	0.866
LOC107888743	LOC107916695	A0A1U8HWV3	A0A1U8KGH7	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.906
LOC107888743	LOC107922495	A0A1U8HWV3	A0A1U8L4P0	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Transcription factor IIIB 90 kDa subunit-like.	0.906
LOC107888743	LOC107931920	A0A1U8HWV3	A0A1U8LXT2	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor 3C polypeptide 3-like isoform X1.	0.894
LOC107888743	LOC107947032	A0A1U8HWV3	A0A1U8NDE7	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	General transcription factor 3C polypeptide 3-like isoform X1.	0.894
LOC107889049	LOC107888743	A0A1U8HS33	A0A1U8HWV3	Transcription factor TFIIIB component B'' homolog.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
LOC107889049	LOC107891629	A0A1U8HS33	A0A1U8I146	Transcription factor TFIIIB component B'' homolog.	Transcription factor TFIIIB component B'' homolog.	0.543
LOC107889049	LOC107892078	A0A1U8HS33	A0A1U8I2U3	Transcription factor TFIIIB component B'' homolog.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.975
LOC107889049	LOC107893131	A0A1U8HS33	A0A1U8I5Q6	Transcription factor TFIIIB component B'' homolog.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.973
LOC107889049	LOC107912745	A0A1U8HS33	A0A1U8K7D2	Transcription factor TFIIIB component B'' homolog.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.973
LOC107889049	LOC107913018	A0A1U8HS33	A0A1U8K337	Transcription factor TFIIIB component B'' homolog.	General transcription factor 3C polypeptide 5-like.	0.938
LOC107889049	LOC107916695	A0A1U8HS33	A0A1U8KGH7	Transcription factor TFIIIB component B'' homolog.	Transcription factor IIIB 90 kDa subunit-like isoform X1.	0.973
LOC107889049	LOC107922495	A0A1U8HS33	A0A1U8L4P0	Transcription factor TFIIIB component B'' homolog.	Transcription factor IIIB 90 kDa subunit-like.	0.973
LOC107889049	LOC107931920	A0A1U8HS33	A0A1U8LXT2	Transcription factor TFIIIB component B'' homolog.	General transcription factor 3C polypeptide 3-like isoform X1.	0.985
LOC107889049	LOC107947032	A0A1U8HS33	A0A1U8NDE7	Transcription factor TFIIIB component B'' homolog.	General transcription factor 3C polypeptide 3-like isoform X1.	0.985

page 1 of 6

Server load: low (14%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About