STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107915876CRIB domain-containing protein RIC5-like. (178 aa)    
Predicted Functional Partners:
LOC107941737
Pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like.
  
   
 0.544
LOC107912320
LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g30825, chloroplastic-like.
  
   
 0.537
LOC107934551
Uncharacterized protein LOC107934551.
  
     0.522
LOC107945772
Factor of DNA methylation 1-like.
  
     0.522
LOC107949897
Factor of DNA methylation 1-like.
  
     0.522
LOC107904281
Uncharacterized protein LOC107904281.
  
     0.521
LOC107908985
Factor of DNA methylation 1-like isoform X1.
  
     0.521
LOC107915805
Uncharacterized protein LOC107915805.
  
     0.521
LOC107941678
Uncharacterized protein LOC107941678.
  
     0.521
LOC107904154
Uncharacterized protein LOC107904154.
  
     0.520
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.