STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107917647Ribulose-phosphate 3-epimerase, cytoplasmic isoform-like. (128 aa)    
Predicted Functional Partners:
LOC107899903
LOW QUALITY PROTEIN: transketolase, chloroplastic.
  
 0.954
LOC107911586
Transketolase, chloroplastic-like.
  
 0.954
LOC107911906
Transketolase, chloroplastic-like isoform X1.
  
 0.954
LOC107941756
Transketolase, chloroplastic-like.
  
 0.954
LOC107945612
Transketolase, chloroplastic-like.
  
 0.954
LOC107952895
Transketolase, chloroplastic-like.
  
 0.954
LOC107954570
Transketolase, chloroplastic.
  
 0.954
LOC107886437
Probable ribose-5-phosphate isomerase 2.
  
 0.949
LOC107910027
Probable ribose-5-phosphate isomerase 2.
  
 0.949
LOC107916555
Probable ribose-5-phosphate isomerase 2.
  
 0.949
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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