STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107917927Tubby-like F-box protein; Belongs to the TUB family. (389 aa)    
Predicted Functional Partners:
LOC107897859
Sodium transporter HKT1-like.
      
 0.704
LOC107913819
Sodium transporter HKT1-like.
      
 0.704
LOC107898110
Ethylene-responsive transcription factor ERF113.
      
 0.698
LOC107886775
Two pore calcium channel protein 1-like.
    
 0.603
LOC107920003
SURP and G-patch domain-containing protein 1-like protein isoform X1.
   
  
 0.423
LOC107926266
SURP and G-patch domain-containing protein 1-like protein.
   
  
 0.423
LOC107893611
cinnamoyl-CoA reductase 1-like isoform X1.
      
 0.408
LOC107933810
cinnamoyl-CoA reductase 1-like.
      
 0.408
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.