STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107918413PITH domain-containing protein At3g04780-like. (177 aa)    
Predicted Functional Partners:
LOC107901767
Lys-63-specific deubiquitinase BRCC36-like isoform X1.
   
 
 0.778
LOC107905553
26S proteasome non-ATPase regulatory subunit 14 homolog.
   
 
 0.778
LOC107935614
26S proteasome non-ATPase regulatory subunit 14 homolog.
   
 
 0.778
LOC107940325
26S proteasome non-ATPase regulatory subunit 14 homolog.
   
 
 0.778
LOC107958106
26S proteasome non-ATPase regulatory subunit 14 homolog.
   
 
 0.778
LOC107961695
Lys-63-specific deubiquitinase BRCC36-like.
   
 
 0.778
LOC107893636
26S protease regulatory subunit 6A homolog; Belongs to the AAA ATPase family.
   
   0.710
LOC107920480
26S protease regulatory subunit 6A homolog; Belongs to the AAA ATPase family.
   
   0.710
LOC107930935
26S protease regulatory subunit 6A homolog; Belongs to the AAA ATPase family.
   
   0.710
LOC107900528
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
   
 
  0.657
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.