STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107917908Golgin candidate 5-like. (965 aa)    
Predicted Functional Partners:
LOC107925085
Vacuolar protein sorting-associated protein 54, chloroplastic-like.
   
 
 0.737
LOC107930362
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 54, chloroplastic-like.
   
 
 0.737
LOC107914050
Vacuolar protein sorting-associated protein 52 A-like.
     
 0.735
LOC107959524
Vacuolar protein sorting-associated protein 52 A-like isoform X1.
     
 0.735
LOC107897597
Protein GRIP-like.
   
 0.724
LOC107914256
Protein GRIP-like.
   
 0.724
LOC107898520
Ras-related protein RABH1e.
    
 0.717
LOC107899766
Ras-related protein RABH1e-like isoform X1.
    
 0.717
LOC107911636
Ras-related protein RABH1e-like.
    
 0.717
LOC107916121
Ras-related protein RABH1b-like.
    
 0.717
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.