STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107919888Serine/arginine-rich-splicing factor SR34-like. (143 aa)    
Predicted Functional Partners:
LOC107909182
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.911
LOC107942735
Probable small nuclear ribonucleoprotein F.
   
 0.910
LOC107953492
Cleavage stimulation factor subunit 50 isoform X1.
    
 0.865
LOC107928461
30-kDa cleavage and polyadenylation specificity factor 30-like.
   
 0.846
LOC107945204
30-kDa cleavage and polyadenylation specificity factor 30-like.
   
 0.846
LOC107893983
Serine/arginine-rich splicing factor SC35-like.
   
 0.843
LOC107920341
Serine/arginine-rich splicing factor SC35-like.
   
 0.843
LOC107948604
Serine/arginine-rich splicing factor SC35-like.
   
 0.843
LOC107949131
Serine/arginine-rich splicing factor SC35-like isoform X1.
   
 0.843
LOC107886794
Nuclear cap-binding protein subunit 2.
   
 0.841
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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