STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107920088Uncharacterized protein LOC107920088. (1266 aa)    
Predicted Functional Partners:
LOC107895064
Uncharacterized protein LOC107895064.
  
     0.509
LOC107920121
Uncharacterized protein LOC107920121.
  
     0.509
LOC107914348
Growth-regulating factor 1-like.
  
     0.508
LOC107889727
Uncharacterized protein LOC107889727.
  
     0.499
LOC107943524
Protein BRANCHLESS TRICHOME-like.
  
     0.492
LOC107909525
Protein TIFY 9-like.
  
     0.491
LOC107947210
Protein BRANCHLESS TRICHOME-like.
  
     0.487
LOC107898898
Uncharacterized protein LOC107898898.
  
     0.485
LOC107933043
Protein TIFY 9-like.
  
     0.484
LOC107956820
F-box protein At5g07610-like.
  
     0.483
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.