LOC107919859 protein (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107919859

Probable 18S rRNA (Guanine-N(7))-methyltransferase. (291 aa)

Predicted Functional Partners:

LOC107953158

0.993

LOC107954112

0.993

LOC107900868

0.992

LOC107955437

0.992

LOC107958649

0.992

LOC107890684

0.985

LOC107896482

0.985

LOC107916910

0.978

LOC107917964

0.978

LOC107922049

0.978

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107890684	LOC107896482	A0A1U8HXE9	A0A1U8IG99	RNA-binding protein NOB1-like.	RNA-binding protein NOB1-like.	0.900
LOC107890684	LOC107900868	A0A1U8HXE9	A0A1U8IVJ5	RNA-binding protein NOB1-like.	Multifunctional methyltransferase subunit TRM112-like protein At1g22270.	0.932
LOC107890684	LOC107916910	A0A1U8HXE9	A0A1U8KH36	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107890684	LOC107917964	A0A1U8HXE9	A0A1U8KK62	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107890684	LOC107919859	A0A1U8HXE9	A0A1U8KUS6	RNA-binding protein NOB1-like.	Probable 18S rRNA (Guanine-N(7))-methyltransferase.	0.985
LOC107890684	LOC107922049	A0A1U8HXE9	A0A1U8KY73	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107890684	LOC107953158	A0A1U8HXE9	A0A1U8P0L8	RNA-binding protein NOB1-like.	Bystin-like.	0.999
LOC107890684	LOC107954112	A0A1U8HXE9	A0A1U8P4D2	RNA-binding protein NOB1-like.	Bystin-like.	0.999
LOC107890684	LOC107955437	A0A1U8HXE9	A0A1U8P6H0	RNA-binding protein NOB1-like.	Protein LTV1 homolog isoform X1.	0.999
LOC107890684	LOC107958649	A0A1U8HXE9	A0A1U8PFH3	RNA-binding protein NOB1-like.	Protein LTV1 homolog isoform X1.	0.999
LOC107896482	LOC107890684	A0A1U8IG99	A0A1U8HXE9	RNA-binding protein NOB1-like.	RNA-binding protein NOB1-like.	0.900
LOC107896482	LOC107900868	A0A1U8IG99	A0A1U8IVJ5	RNA-binding protein NOB1-like.	Multifunctional methyltransferase subunit TRM112-like protein At1g22270.	0.932
LOC107896482	LOC107916910	A0A1U8IG99	A0A1U8KH36	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107896482	LOC107917964	A0A1U8IG99	A0A1U8KK62	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107896482	LOC107919859	A0A1U8IG99	A0A1U8KUS6	RNA-binding protein NOB1-like.	Probable 18S rRNA (Guanine-N(7))-methyltransferase.	0.985
LOC107896482	LOC107922049	A0A1U8IG99	A0A1U8KY73	RNA-binding protein NOB1-like.	pre-rRNA-processing protein TSR1 homolog.	0.997
LOC107896482	LOC107953158	A0A1U8IG99	A0A1U8P0L8	RNA-binding protein NOB1-like.	Bystin-like.	0.999
LOC107896482	LOC107954112	A0A1U8IG99	A0A1U8P4D2	RNA-binding protein NOB1-like.	Bystin-like.	0.999
LOC107896482	LOC107955437	A0A1U8IG99	A0A1U8P6H0	RNA-binding protein NOB1-like.	Protein LTV1 homolog isoform X1.	0.999
LOC107896482	LOC107958649	A0A1U8IG99	A0A1U8PFH3	RNA-binding protein NOB1-like.	Protein LTV1 homolog isoform X1.	0.999

page 1 of 6

Server load: low (12%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2023

Credits

Access

Info

About