STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107925294Uncharacterized protein LOC107925294 isoform X1. (430 aa)    
Predicted Functional Partners:
LOC107950129
Protein ABIL2-like isoform X1.
  
     0.452
LOC107951379
Protein ABIL2-like isoform X1.
  
     0.448
LOC107936617
methionyl-tRNA formyltransferase-like.
  
   0.442
LOC107953923
methionyl-tRNA formyltransferase-like.
  
   0.442
LOC107896632
COBRA-like protein 7.
  
     0.441
LOC107916189
COBRA-like protein 7.
  
     0.441
LOC107946308
Uncharacterized protein LOC107946308 isoform X1.
  
     0.439
LOC107893199
Uncharacterized protein LOC107893199.
  
     0.433
LOC107908508
COBRA-like protein 7.
  
     0.431
LOC107933235
COBRA-like protein 7.
  
     0.427
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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