LOC107925167 protein (Gossypium hirsutum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107925167

Uncharacterized protein LOC107925167. (968 aa)

Predicted Functional Partners:

LOC107906286

0.531

LOC107958538

0.529

LOC107898315

0.525

LOC107906350

0.525

LOC107943551

0.525

LOC107890852

0.521

LOC107893700

0.520

LOC107898842

0.520

LOC107901986

0.519

LOC107938749

0.519

Your Current Organism:

Gossypium hirsutum

NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC107890852	LOC107893700	A0A1U8I3Z4	A0A1U8IEK3	Golgin candidate 2-like.	Uncharacterized protein LOC107893700 isoform X2.	0.478
LOC107890852	LOC107898315	A0A1U8I3Z4	A0A1U8IMI0	Golgin candidate 2-like.	Uncharacterized protein LOC107898315.	0.510
LOC107890852	LOC107898842	A0A1U8I3Z4	A0A1U8IP40	Golgin candidate 2-like.	Putative lipid-transfer protein DIR1.	0.483
LOC107890852	LOC107901986	A0A1U8I3Z4	A0A1U8IZX9	Golgin candidate 2-like.	Uncharacterized protein LOC107893700 isoform X1.	0.482
LOC107890852	LOC107906286	A0A1U8I3Z4	A0A1U8JEH7	Golgin candidate 2-like.	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like.	0.514
LOC107890852	LOC107906350	A0A1U8I3Z4	A0A1U8JEZ1	Golgin candidate 2-like.	Uncharacterized protein LOC107906350.	0.486
LOC107890852	LOC107925167	A0A1U8I3Z4	A0A1U8LD04	Golgin candidate 2-like.	Uncharacterized protein LOC107925167.	0.521
LOC107890852	LOC107938749	A0A1U8I3Z4	A0A1U8MKV8	Golgin candidate 2-like.	Uncharacterized protein LOC107938749.	0.478
LOC107890852	LOC107943551	A0A1U8I3Z4	A0A1U8N4N0	Golgin candidate 2-like.	Mediator of RNA polymerase II transcription subunit 33A-like.	0.465
LOC107890852	LOC107958538	A0A1U8I3Z4	A0A1U8PFA2	Golgin candidate 2-like.	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like.	0.512
LOC107893700	LOC107890852	A0A1U8IEK3	A0A1U8I3Z4	Uncharacterized protein LOC107893700 isoform X2.	Golgin candidate 2-like.	0.478
LOC107893700	LOC107898315	A0A1U8IEK3	A0A1U8IMI0	Uncharacterized protein LOC107893700 isoform X2.	Uncharacterized protein LOC107898315.	0.526
LOC107893700	LOC107898842	A0A1U8IEK3	A0A1U8IP40	Uncharacterized protein LOC107893700 isoform X2.	Putative lipid-transfer protein DIR1.	0.513
LOC107893700	LOC107906286	A0A1U8IEK3	A0A1U8JEH7	Uncharacterized protein LOC107893700 isoform X2.	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like.	0.476
LOC107893700	LOC107925167	A0A1U8IEK3	A0A1U8LD04	Uncharacterized protein LOC107893700 isoform X2.	Uncharacterized protein LOC107925167.	0.520
LOC107893700	LOC107943551	A0A1U8IEK3	A0A1U8N4N0	Uncharacterized protein LOC107893700 isoform X2.	Mediator of RNA polymerase II transcription subunit 33A-like.	0.423
LOC107893700	LOC107958538	A0A1U8IEK3	A0A1U8PFA2	Uncharacterized protein LOC107893700 isoform X2.	Pentatricopeptide repeat-containing protein At2g30100, chloroplastic-like.	0.478
LOC107898315	LOC107890852	A0A1U8IMI0	A0A1U8I3Z4	Uncharacterized protein LOC107898315.	Golgin candidate 2-like.	0.510
LOC107898315	LOC107893700	A0A1U8IMI0	A0A1U8IEK3	Uncharacterized protein LOC107898315.	Uncharacterized protein LOC107893700 isoform X2.	0.526
LOC107898315	LOC107898842	A0A1U8IMI0	A0A1U8IP40	Uncharacterized protein LOC107898315.	Putative lipid-transfer protein DIR1.	0.525

page 1 of 5

Server load: low (28%) [HD]

Permalink

Network

Cooccurrence

Textmining

Neighborhood

Experiments

Fusion

Databases

Coexpression

© STRING Consortium 2024

Credits

Access

Info

About