STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107926512Chloride channel protein CLC-b-like; Belongs to the chloride channel (TC 2.A.49) family. (788 aa)    
Predicted Functional Partners:
LOC107925457
Eukaryotic initiation factor 4A-like isoform X1.
     
 0.810
LOC107889092
Eukaryotic initiation factor 4A-8-like; Belongs to the DEAD box helicase family.
     
 0.751
LOC107891725
Eukaryotic initiation factor 4A-8-like; Belongs to the DEAD box helicase family.
     
 0.751
LOC107915039
Eukaryotic initiation factor 4A-8-like; Belongs to the DEAD box helicase family.
     
 0.751
LOC107920144
Eukaryotic initiation factor 4A-14; Belongs to the DEAD box helicase family.
     
 0.751
LOC107958403
Eukaryotic initiation factor 4A-10; Belongs to the DEAD box helicase family.
     
 0.751
LOC107958864
Eukaryotic initiation factor 4A-9; Belongs to the DEAD box helicase family.
     
 0.751
LOC107962830
Eukaryotic initiation factor 4A-8-like; Belongs to the DEAD box helicase family.
     
 0.751
LOC107940999
Chloride channel protein.
  
 
 
 0.538
LOC107929744
Chloride channel protein.
  
 
 
 0.535
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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