STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107928483Putative F-box protein At3g25750. (383 aa)    
Predicted Functional Partners:
LOC107920131
4-hydroxyphenylpyruvate dioxygenase.
     
 0.561
LOC107939399
Uncharacterized protein LOC107939399.
  
 
   0.539
LOC107960469
Uncharacterized protein LOC107960469.
  
 
   0.538
LOC107940951
Uncharacterized protein LOC107940951.
  
 
   0.537
LOC107907671
Uncharacterized protein LOC107907671.
  
 
   0.536
LOC107906494
Uncharacterized protein LOC107906494.
  
 
   0.535
LOC107921488
Uncharacterized protein LOC107921488.
  
 
   0.535
LOC107927735
Uncharacterized protein LOC107927735.
  
 
   0.534
LOC107933823
Uncharacterized protein LOC107933823.
  
 
   0.533
LOC107888321
Uncharacterized protein LOC107888321.
  
 
   0.532
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.