STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107927956Signal recognition particle 43 kDa protein, chloroplastic-like. (415 aa)    
Predicted Functional Partners:
LOC107899247
Signal recognition particle 54 kDa protein, chloroplastic-like.
   
 0.963
LOC107948423
Signal recognition particle 54 kDa protein, chloroplastic-like.
   
 0.963
LOC107885941
Inner membrane protein PPF-1, chloroplastic-like.
    
 
 0.918
LOC107928698
ALBINO3-like protein 1, chloroplastic.
    
 
 0.766
LOC107946256
ALBINO3-like protein 1, chloroplastic.
    
 
 0.766
LOC107910266
Signal recognition particle 14 kDa protein-like.
    
 0.648
LOC107951041
Signal recognition particle 14 kDa protein-like.
    
 0.648
LOC107960275
Signal recognition particle 19 kDa protein.
    
 0.624
LOC107937836
Kinesin-like calmodulin-binding protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.621
LOC107939602
Kinesin-like calmodulin-binding protein isoform X1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 0.621
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.