STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107928412Perakine reductase-like. (344 aa)    
Predicted Functional Partners:
LOC107947088
Protein SEH1-like; Belongs to the WD repeat SEC13 family.
    
 0.533
LOC107947110
Protein SEH1-like; Belongs to the WD repeat SEC13 family.
    
 0.533
LOC107911797
Protein transport protein SEC13 homolog B-like; Belongs to the WD repeat SEC13 family.
    
 0.529
LOC107924493
Protein transport protein SEC13 homolog B-like isoform X1; Belongs to the WD repeat SEC13 family.
    
 0.529
LOC107939882
Protein transport protein SEC13 homolog B; Belongs to the WD repeat SEC13 family.
    
 0.529
LOC107897098
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.491
LOC107901527
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.491
LOC107929855
Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatC family.
    
 0.491
LOC107891730
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.482
LOC107906063
LOW QUALITY PROTEIN: AF4/FMR2 family member 4-like.
    
 0.482
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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