STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107929682Agamous-like MADS-box protein AGL15. (249 aa)    
Predicted Functional Partners:
LMI1-D1a
Homeobox-leucine zipper protein ATHB-22.
      
 0.698
LOC107904856
Probable WRKY transcription factor 70.
      
 0.617
WRKY40
Probable WRKY transcription factor 40.
      
 0.615
LOC107910889
Histone deacetylase complex subunit SAP18-like.
    
 
 0.478
LOC107957286
Histone deacetylase complex subunit SAP18-like isoform X1.
    
 
 0.478
LOC107905791
B3 domain-containing transcription factor LEC2-like.
      
 0.465
LOC107913963
B3 domain-containing transcription factor LEC2-like.
      
 0.465
LOC107955953
Floricaula/leafy-like transcription factor; Probable transcription factor. Belongs to the FLO/LFY family.
    
 
 0.449
LOC107886220
21 kDa protein-like.
      
 0.405
LOC107954930
B3 domain-containing transcription factor ABI3-like isoform X1.
      
 0.402
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.