STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107930167RING-type E3 ubiquitin transferase. (1011 aa)    
Predicted Functional Partners:
LOC107959940
Protein TIFY 6B-like isoform X1.
  
     0.476
LOC107903950
Protein TIFY 6B-like isoform X1.
  
     0.474
LOC107902641
Transcription repressor OFP7-like.
  
     0.465
LOC107961116
Transcription repressor OFP7-like.
  
     0.463
LOC107940640
MYB-like transcription factor ETC1.
  
     0.451
LOC107918771
Scarecrow-like protein 32; Belongs to the GRAS family.
  
     0.450
LOC107935018
Filament-like plant protein 7.
  
     0.448
LOC107946328
MYB-like transcription factor ETC1.
  
     0.448
LOC107891000
Uncharacterized protein LOC107891000 isoform X1.
  
     0.447
LOC107889740
Uncharacterized protein LOC107889740.
  
     0.445
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.