STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107931397VAN3-binding protein-like. (506 aa)    
Predicted Functional Partners:
LOC107934088
Uncharacterized protein At1g04910-like.
  
     0.505
LOC107923865
Uncharacterized protein At1g04910-like isoform X1.
  
     0.504
LOC107933587
Uncharacterized protein LOC107933587.
  
     0.502
LOC107929367
Uncharacterized protein At1g04910-like.
  
     0.501
LOC107920635
Uncharacterized protein LOC107920635.
  
     0.499
LOC107910920
Uncharacterized protein At1g04910-like.
  
     0.492
LOC107905845
Pentatricopeptide repeat-containing protein At4g18975, chloroplastic-like isoform X1.
  
     0.487
LOC107924065
Uncharacterized protein LOC107924065.
  
     0.487
LOC107886070
Uncharacterized protein At1g04910.
  
     0.486
LOC107942024
Uncharacterized protein LOC107942024.
  
     0.485
Your Current Organism:
Gossypium hirsutum
NCBI taxonomy Id: 3635
Other names: American cotton, American upland cotton, G. hirsutum, Gossypium hirsutum L., Gossypium hirsutum subsp. mexicanum, Gossypium hirsutum subsp. mexicanum (Tod.) Mauer, Gossypium lanceolatum, Gossypium lanceolatum Tod., Gossypium purpurascens, Gossypium purpurascens Poir., cotton
Server load: low (20%) [HD]